File List

Here is a list of all files with brief descriptions:
/home/matt/dashboards/calaTK/Code/Applications/AtlasBuilder/AtlasBuilder.cxx [code]
/home/matt/dashboards/calaTK/Code/Applications/GeometricMetamorphosis/GeometricMetamorphosis.cxx [code]
/home/matt/dashboards/calaTK/Code/Applications/LDDMM/LDDMM.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAlgorithm.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAlgorithmBase.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAlgorithmBase.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAlgorithmFactory.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAlgorithmFactory.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAtlasBuilder.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAtlasBuilderFullGradient.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CAtlasBuilderSubiterationUpdate.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLDDMMGenericRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLDDMMGeodesicShootingInitialImageMomentumRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLDDMMGeometricMetamorphosisRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLDDMMGrowthModelRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLDDMMSimplifiedMetamorphosisGeodesicShootingRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLDDMMVelocityFieldRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLDDMMVelocityFieldWithMomentumRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CLongitudinalAtlasBuilder.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Algorithms/CMetamorphosisGeodesicShootingInitialImageMomentumRegistration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Base/CBase.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Base/CBase.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Base/CProcessBase.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Base/CProcessBase.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/CALATKCommon.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/CALATKCommon.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/calatkMacros.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/VectorArray.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/VectorArray.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/VectorField.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/VectorField.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/VectorImage.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/DataStructures/VectorImage.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CFourierDomainKernel.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CFourierDomainKernel.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CGaussianKernel.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CGaussianKernel.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CHelmholtzKernel.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CHelmholtzKernel.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CKernel.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CKernelFactory.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CKernelFactory.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CMultiGaussianKernel.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Kernels/CMultiGaussianKernel.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Metrics/CMetric.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Metrics/CMetricFactory.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Metrics/CMetricSSD.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Metrics/CMetricSSD.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CEvolver.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/COneStepEvolver.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/COneStepEvolverSemiLagrangianAdvection.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/COneStepEvolverSemiLagrangianAdvection.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolver.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverFactory.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverIpOpt.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverLBFGS.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverLineSearch.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverLineSearchConstrained.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverLineSearchUnconstrained.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverMultiScale.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CSolverNLOpt.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CStationaryEvolver.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Numerics/CStationaryEvolver.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CAtlasFullGradientObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CAtlasObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CAtlasSubiterationUpdateObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CAugmentedLagrangianInterface.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CConstrainedOptimizationInterface.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CLDDMMAdjointGeodesicShootingObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CLDDMMGeodesicShootingObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CLDDMMGeometricMetamorphosisObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CLDDMMGrowthModelObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CLDDMMSimplifiedGeodesicShootingObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CLDDMMSimplifiedMetamorphosisGeodesicShootingObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CLDDMMSpatioTemporalVelocityFieldObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CMetamorphosisAdjointGeodesicShootingObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CObjectiveFunctionBase.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CObjectiveFunctionFactory.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CObjectiveFunctionFactory.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CScalarObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CVelocityFieldObjectiveFunction.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/ObjectiveFunctions/CVelocityFieldObjectiveFunctionWithMomentum.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Resamplers/CResampler.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Resamplers/CResamplerLinear.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Resamplers/CResamplerLinear.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CState.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateFactory.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateFactory.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateImageDomain.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateImageMultipleStates.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateInitialImageMomentum.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateInitialImageMomentum.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateInitialMomentum.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateInitialMomentum.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateMultipleStates.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateScalar.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateSpatioTemporalVelocityField.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/States/CStateSpatioTemporalVelocityField.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/ApplicationUtils.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/ApplicationUtils.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/CJSONConfiguration.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/CJSONConfiguration.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/CJSONDataParser.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/CJSONDataParser.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/CQueryEnvironmentVariables.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/CQueryEnvironmentVariables.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/KernelUtils.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/LDDMMUtils.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/LogUtils.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/LogUtils.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/Timer.cxx [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/Timer.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/VectorFieldUtils.h [code]
/home/matt/dashboards/calaTK/Code/Libraries/Utilities/VectorImageUtils.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/DTIGEENEW.cpp [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/GEEutil_MN.cpp [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/GEEutil_MN.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/geometry.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/globals.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/globals_extern.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/itkLongitudinalStatisticsFilter.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/lstatGEE.cxx [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/pointdef.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/surallfileM10Y06_MN_JP.cpp [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/surallfileM10Y06_MN_JP.h [code]
/home/matt/dashboards/calaTK/Code/Statistics/lstatGEE/tstMatrixLogExp.cxx [code]
/home/matt/dashboards/calaTK/Code/Utilities/applyMap.cxx [code]